fortnight ending 26.12.01
|
PCR |
Isolation |
Antigen Detection by IF |
Other Antigen Detection |
Serology |
Positives this 2/52 |
Positives last 2/52 |
Comments |
|
|
Enteric Pathogens |
||||||||
| Campylobacter spp. |
-
|
1
|
-
|
-
|
-
|
1
|
-
|
-
|
| Cyclospora |
-
|
-
|
-
|
2*
|
-
|
2
|
-
|
-
|
| Cryptosporidium |
-
|
-
|
-
|
1*
|
-
|
1
|
-
|
-
|
|
Entamoeba histolytica |
- |
- |
- |
2* |
- |
2 |
2 |
*by microscopy |
|
Giardia lamblia |
- |
- |
- |
2* |
- |
2 |
3 |
*by microscopy |
|
Norwalk |
- |
- |
- |
1* |
- |
1 |
4 |
by EM |
| Schistosoma |
-
|
-
|
-
|
-
|
1
|
1
|
3
|
-
|
|
Strongyloides |
- |
- |
- |
- |
2 |
2 |
3 |
- |
|
PCR |
Isolation |
Antigen Detection by IF |
Other Antigen Detection |
Serology |
Positives this 2/52 |
Positives last 2/52 |
Comments |
|
|
Eye Infections |
||||||||
|
Adenovirus |
2 |
3* |
- |
- |
- |
5 |
4 |
*prev
positives |
| Herpes simplex |
1
|
-
|
-
|
-
|
-
|
1
|
4
|
-
|
|
Varicella zoster |
- |
- |
- |
- |
- |
- |
- |
- |
| Hepatitis Viruses | ||||||||
|
A acute |
- |
- |
- |
- |
- |
- |
1 |
- |
|
B new |
- |
- |
- |
- |
6 |
6 |
6 |
- |
| C new |
-
|
-
|
-
|
-
|
30
|
30
|
43
|
-
|
| D new |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
|
E new |
- |
- |
- |
- |
- |
- |
- |
- |
| Malaria | ||||||||
|
P. vivax |
-
|
-
|
-
|
1
|
-
|
1
|
3
|
-
|
| P. falciparum |
-
|
-
|
-
|
-
|
-
|
-
|
1
|
-
|
| P. ovale |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
| P.falc/ovale mixed |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
|
PCR |
Isolation |
Antigen Detection by IF |
Other Antigen Detection |
Serology |
Positives this 2/52 |
Positives last 2/52 |
Comments |
|
|
Neurological |
||||||||
|
Enteroviruses |
3 |
- |
- |
- |
- |
3 |
5 |
- |
|
Flavivirus Gp B |
- |
- |
- |
- |
1 |
1 |
- |
- |
|
Herpes simplex |
- |
- |
- |
- |
- |
- |
2 |
- |
| Mumps |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
|
Neisseria meningitidis |
- |
- |
- |
- |
- |
- |
- |
- |
| Varicella zoster |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
| Rashes | ||||||||
| Barmah Forest Virus |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
- |
|
Measles
|
-
|
-
|
-
|
-
|
1
|
1
|
2
|
-
|
|
Parvovirus |
- |
- |
- |
- |
4 |
4 |
2 |
- |
| Rickettsia |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
|
Ross River virus |
- |
- |
- |
- |
1 |
1 |
1 |
- |
|
Rubella |
- |
- |
- |
- |
3 |
3 |
3 |
- |
| Varicella zoster |
7
|
-
|
-
|
-
|
-
|
7
|
15
|
- |
|
PCR |
Isolation |
Antigen Detection by IF |
Other Antigen Detection |
Serology |
Positives this 2/52 |
Positives last 2/52 |
Comments |
|
|
Respiratory Pathogens |
||||||||
|---|---|---|---|---|---|---|---|---|
|
Influenza A |
- |
- |
- |
- |
- |
- |
1 |
- |
|
Influenza B |
- |
- |
- |
- |
- |
- |
- |
- |
|
Legionella spp |
- |
- |
- |
3* |
6 |
9 |
4 |
* urinary antigen |
|
M. tuberculosis |
- |
9 |
- |
- |
- |
9 |
11 |
- |
| M. bovis BCG |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
| Other mycobacteria |
-
|
3*
|
-
|
-
|
-
|
3
|
-
|
M.ulcerans(x1),
M.abscessus(x2) |
| Mycoplasma |
-
|
-
|
-
|
-
|
9
|
9
|
3
|
-
|
| Parainfluenza |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
| Pertussis |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
| Psittacosis |
-
|
-
|
-
|
-
|
2
|
2
|
3
|
-
|
| Q fever |
-
|
-
|
-
|
-
|
-
|
-
|
1
|
-
|
| Picornavirus |
1
|
-
|
-
|
-
|
-
|
1
|
-
|
-
|
|
RSV |
1 |
- |
- |
- |
- |
1 |
- |
- |
|
PCR |
Isolation |
Antigen Detection by IF |
Other Antigen Detection |
Serology |
Positives this 2/52 |
Positives last 2/52 |
Comments |
|
|
Skin/Mucosal Lesions |
||||||||
|---|---|---|---|---|---|---|---|---|
|
Herpes simplex
|
24
|
-
|
-
|
-
|
-
|
24
|
24
|
-
|
|
M. ulcerans |
- |
- |
- |
- |
- |
- |
- |
- |
|
Uro-genital Pathogens |
||||||||
|
Chlamydia |
- |
- |
- |
5* |
- |
5 |
10 |
* DNA probe |
|
Herpes simplex |
20 |
- |
- |
- |
- |
20 |
13 |
- |
| N. gonorrhoeae |
3
|
4
|
-
|
-
|
-
|
7
|
6
|
*1x
urethral,
1x rectal, lx throat, 2x urine, 1x vag/throat |
| Syphilis |
-
|
-
|
-
|
-
|
13*
|
13
|
14
|
*
1x RPR >8
|
|
Varicella zoster |
1 |
- |
- |
- |
- |
1 |
- |
- |