fortnight ending 25.12.2002
|
PCR |
Isolation |
Antigen Detection by IF |
Other Antigen Detection |
Serology |
Positives this 2/52 |
Positives last 2/52 |
Comments |
|
|
Enteric Pathogens |
||||||||
| Campylobacter spp. |
-
|
1
|
-
|
-
|
-
|
1
|
-
|
-
|
| Cyclospora |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
| Cryptosporidium |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
| Echinococcus granulosis |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
|
Entamoeba histolytica |
- |
- |
- |
1* |
2 |
3 |
2 |
* microscopy |
|
Giardia lamblia |
- |
- |
- |
2* |
- |
2 |
1 |
* microscopy |
|
Norwalk |
17 |
- |
- |
- |
- |
17 |
24 |
- |
|
Rotavirus |
- |
- |
- |
- |
- |
- |
- |
- |
| Salmonella spp. |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
| Schistosoma |
-
|
-
|
-
|
-
|
3
|
3
|
1
|
-
|
|
Strongyloides |
- |
- |
- |
- |
- |
- |
3 |
- |
|
PCR |
Isolation |
Antigen Detection by IF |
Other Antigen Detection |
Serology |
Positives this 2/52 |
Positives last 2/52 |
Comments |
|
|
Eye Infections |
||||||||
|
Adenovirus |
2 |
- |
- |
- |
- |
2 |
4 |
- |
| Herpes simplex |
1
|
-
|
-
|
-
|
-
|
1
|
3
|
-
|
|
Varicella zoster |
- |
- |
- |
- |
- |
- |
- |
- |
| Hepatitis Viruses | ||||||||
|
A acute |
- |
- |
- |
- |
1 |
1 |
- |
- |
|
B new |
- |
- |
- |
- |
5 |
5 |
7 |
- |
| C new |
-
|
-
|
-
|
-
|
13
|
13
|
31
|
-
|
| D new |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
|
E new |
- |
- |
- |
- |
- |
- |
1 |
- |
| Malaria | ||||||||
|
P. vivax |
-
|
-
|
-
|
1
|
-
|
1
|
3
|
-
|
| P. falciparum |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
| P. ovale |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
| P.falc/ovale mixed |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
|
PCR |
Isolation |
Antigen Detection by IF |
Other Antigen Detection |
Serology |
Positives this 2/52 |
Positives last 2/52 |
Comments |
|
|
Neurological |
||||||||
| Coxsackie B5 |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
|
Enteroviruses |
8 |
- |
- |
- |
- |
8 |
1 |
- |
|
Flavivirus Gp B |
- |
- |
- |
- |
1 |
1 |
1 |
- |
|
Herpes simplex |
- |
- |
- |
- |
- |
- |
- |
- |
| Mumps |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
|
Neisseria meningitidis |
- |
- |
- |
- |
- |
- |
- |
- |
| Varicella zoster |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
| Rashes | ||||||||
| Barmah Forest Virus |
-
|
-
|
-
|
-
|
-
|
-
|
1
|
- |
|
Measles
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
|
Parvovirus |
- |
- |
- |
- |
2 |
2 |
1 |
- |
| Rickettsia |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
|
Ross River virus |
- |
- |
- |
- |
- |
- |
- |
- |
|
Rubella |
- |
- |
- |
- |
- |
- |
- |
- |
| Varicella zoster |
1
|
-
|
-
|
-
|
1
|
2
|
-
|
- |
|
PCR |
Isolation |
Antigen Detection by IF |
Other Antigen Detection |
Serology |
Positives this 2/52 |
Positives last 2/52 |
Comments |
|
|
Respiratory Pathogens |
||||||||
|---|---|---|---|---|---|---|---|---|
|
Influenza A |
1 |
- |
- |
- |
- |
1 |
- |
- |
|
Influenza B |
- |
- |
- |
- |
- |
- |
- |
- |
|
Legionella spp |
- |
2** |
- |
3** |
6 |
11 |
8 |
*
Urinary antigen |
|
M. tuberculosis |
- |
7 |
- |
- |
- |
7 |
10 |
- |
| M. bovis BCG |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
| Other significant mycobacteria |
-
|
3*
|
-
|
-
|
-
|
3
|
1
|
*
2x M.Kansasii
1x M.abscessus |
| Mycoplasma |
-
|
-
|
-
|
-
|
8
|
8
|
8
|
-
|
| Parainfluenza |
-
|
-
|
-
|
-
|
-
|
-
|
4
|
-
|
| Pertussis |
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
| Psittacosis |
-
|
-
|
-
|
-
|
1
|
1
|
2
|
-
|
| Q fever |
-
|
-
|
-
|
-
|
1
|
1
|
2
|
-
|
| Picornavirus |
8
|
-
|
-
|
-
|
-
|
8
|
3
|
-
|
|
RSV |
- |
- |
- |
- |
- |
- |
- |
- |
|
PCR |
Isolation |
Antigen Detection by IF |
Other Antigen Detection |
Serology |
Positives this 2/52 |
Positives last 2/52 |
Comments |
|
|
Skin/Mucosal Lesions |
||||||||
|---|---|---|---|---|---|---|---|---|
|
Herpes simplex
|
5
|
-
|
-
|
-
|
-
|
5
|
9
|
-
|
| M. ulcerans |
-
|
3
|
-
|
-
|
-
|
3
|
1
|
-
|
|
M. contagiosum pox |
- |
- |
- |
- |
- |
- |
- |
- |
|
Uro-genital Pathogens |
||||||||
|
Chlamydia |
6 |
- |
- |
- |
- |
6 |
9 |
- |
|
Herpes simplex |
3 |
- |
- |
- |
- |
3 |
5 |
- |
| N. gonorrhoeae |
2
|
3
|
-
|
-
|
-
|
5
|
6
|
*1x
urethral,
2x rectal, 2x urine |
| Syphilis |
-
|
-
|
-
|
-
|
8
|
8
|
21
|
*
no RPR >16
|
|
Varicella zoster |
- |
- |
- |
- |
- |
- |
1 |
- |